SrasV1, Main, Exploration, bibRecord, 002937

Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences

Identifieur interne : 002937 ( Main/Exploration ); précédent : 002936; suivant : 002938

Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences

Auteurs : Jan Felix Drexler [Allemagne] ; Florian Gloza-Rausch [Allemagne] ; Jörg Glende [Allemagne] ; Victor Max Corman [Allemagne] ; Doreen Muth [Allemagne] ; Matthias Goettsche [Allemagne] ; Antje Seebens [Allemagne] ; Matthias Niedrig [Allemagne] ; Susanne Pfefferle [Allemagne] ; Stoian Yordanov [Bulgarie] ; Lyubomir Zhelyazkov [Bulgarie] ; Uwe Hermanns [Allemagne] ; Peter Vallo [République tchèque] ; Alexander Lukashev [Russie] ; Marcel Alexander Müller [Allemagne] ; HONGKUI DENG [République populaire de Chine] ; Georg Herrler [Allemagne] ; Christian Drosten [Allemagne]

Source :

Journal of virology [ 0022-538X ] ; 2010.

RBID : Pascal:10-0488950

Descripteurs français

KwdFr :
- Animaux, Chine, Chiroptera (virologie), Coronavirus (), Europe, Génome viral (génétique), Humains, RNA replicase (génétique), Séquence nucléotidique, Virus du SRAS (génétique).
MESH :
- génétique : Génome viral, RNA replicase, Virus du SRAS.
- virologie : Chiroptera.
Pascal (Inist)
- Animaux, Chine, Coronavirus, Europe, Génomique, Humains, Séquence nucléotide, Syndrome respiratoire aigu sévère, Séquence nucléotidique.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Animals, Base Sequence, China, Chiroptera (virology), Coronavirus, Coronavirus (classification), Europe, Genome, Viral (genetics), Genomics, Humans, Nucleotide sequence, RNA Replicase (genetics), SARS Virus (genetics), Severe acute respiratory syndrome.
MESH :
- chemical , genetics : RNA Replicase.
- geographic : China, Europe.
- classification : Coronavirus.
- genetics : Genome, Viral, SARS Virus.
- virology : Chiroptera.
- Animals, Base Sequence, Humans.

Abstract

Bats may host emerging viruses, including coronaviruses (CoV). We conducted an evaluation of CoV in rhinolophid and vespertilionid bat species common in Europe. Rhinolophids carried severe acute respiratory syndrome (SARS)-related CoV at high frequencies and concentrations (26% of animals are positive; up to 2.4 x 10⁸ copies per gram of feces), as well as two Alphacoronavirus clades, one novel and one related to the HKU2 clade. All three clades present in Miniopterus bats in China (HKU7, HKU8, and 1A related) were also present in European Miniopterus bats. An additional novel Alphacoronavirus clade (bat CoV [BtCoV]/BNM98-30) was detected in Nyctalus leisleri. A CoV grouping criterion was developed by comparing amino acid identities across an 816-bp fragment of the RNA-dependent RNA polymerases (RdRp) of all accepted mammalian CoV species (RdRp-based grouping units [RGU]). Criteria for defining separate RGU in mammalian CoV were a >4.8% amino acid distance for alphacoronaviruses and a >6.3% distance for betacoronaviruses. All the above-mentioned novel clades represented independent RGU. Strict associations between CoV RGU and host bat genera were confirmed for six independent RGU represented simultaneously in China and Europe. A SARS-related virus (BtCoV/BM48-31/Bulgaria/2008) from a Rhinolophus blasii (Rhi bla) bat was fully sequenced. It is predicted that proteins 3b and 6 were highly divergent from those proteins in all known SARS-related CoV. Open reading frame 8 (ORF8) was surprisingly absent. Surface expression of spike and staining with sera of SARS survivors suggested low antigenic overlap with SARS CoV. However, the receptor binding domain of SARS CoV showed higher similarity with that of BtCoV/BM48-31/Bulgaria/2008 than with that of any Chinese bat-borne CoV. Critical spike domains 472 and 487 were identical and similar, respectively. This study underlines the importance of assessments of the zoonotic potential of widely distributed bat-borne CoV.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953168

Affiliations:

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences</title>
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<author><name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name>
<affiliation wicri:level="3"><inist:fA14 i1="01"><s1>Institute of Virology, University of Bonn Medical Centre</s1>
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<country>Allemagne</country>
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<region type="district" nuts="2">District de Cologne</region>
<settlement type="city">Bonn</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Noctalis, Centre for Bat Protection and Information</s1>
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</author>
<author><name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name>
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</affiliation>
</author>
<author><name sortKey="Niedrig, Matthias" sort="Niedrig, Matthias" uniqKey="Niedrig M" first="Matthias" last="Niedrig">Matthias Niedrig</name>
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<sZ>8 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
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</affiliation>
</author>
<author><name sortKey="Pfefferle, Susanne" sort="Pfefferle, Susanne" uniqKey="Pfefferle S" first="Susanne" last="Pfefferle">Susanne Pfefferle</name>
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<country>Bulgarie</country>
<wicri:noRegion>Forestry Board Directorate of Strandja Natural Park</wicri:noRegion>
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</author>
<author><name sortKey="Zhelyazkov, Lyubomir" sort="Zhelyazkov, Lyubomir" uniqKey="Zhelyazkov L" first="Lyubomir" last="Zhelyazkov">Lyubomir Zhelyazkov</name>
<affiliation wicri:level="1"><inist:fA14 i1="06"><s1>Forestry Board Directorate of Strandja Natural Park</s1>
<s2>Malko Tarnovo</s2>
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<country>Bulgarie</country>
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<author><name sortKey="Hermanns, Uwe" sort="Hermanns, Uwe" uniqKey="Hermanns U" first="Uwe" last="Hermanns">Uwe Hermanns</name>
<affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Bat Conservation and Research Group Mecklenburg-Vorpommern</s1>
<s2>Rostock</s2>
<s3>DEU</s3>
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<country>Allemagne</country>
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<author><name sortKey="Lukashev, Alexander" sort="Lukashev, Alexander" uniqKey="Lukashev A" first="Alexander" last="Lukashev">Alexander Lukashev</name>
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<placeName><settlement type="city">Moscou</settlement>
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<author><name sortKey="Muller, Marcel Alexander" sort="Muller, Marcel Alexander" uniqKey="Muller M" first="Marcel Alexander" last="Müller">Marcel Alexander Müller</name>
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<author><name sortKey="Hongkui Deng" sort="Hongkui Deng" uniqKey="Hongkui Deng" last="Hongkui Deng">HONGKUI DENG</name>
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<country>République populaire de Chine</country>
<placeName><settlement type="city">Pékin</settlement>
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</author>
<author><name sortKey="Herrler, Georg" sort="Herrler, Georg" uniqKey="Herrler G" first="Georg" last="Herrler">Georg Herrler</name>
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</affiliation>
</author>
<author><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name>
<affiliation wicri:level="3"><inist:fA14 i1="01"><s1>Institute of Virology, University of Bonn Medical Centre</s1>
<s2>Bonn</s2>
<s3>DEU</s3>
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<region type="district" nuts="2">District de Cologne</region>
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<series><title level="j" type="main">Journal of virology</title>
<title level="j" type="abbreviated">J. virol.</title>
<idno type="ISSN">0022-538X</idno>
<imprint><date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Journal of virology</title>
<title level="j" type="abbreviated">J. virol.</title>
<idno type="ISSN">0022-538X</idno>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Base Sequence</term>
<term>China</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus</term>
<term>Coronavirus (classification)</term>
<term>Europe</term>
<term>Genome, Viral (genetics)</term>
<term>Genomics</term>
<term>Humans</term>
<term>Nucleotide sequence</term>
<term>RNA Replicase (genetics)</term>
<term>SARS Virus (genetics)</term>
<term>Severe acute respiratory syndrome</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term>
<term>Chine</term>
<term>Chiroptera (virologie)</term>
<term>Coronavirus ()</term>
<term>Europe</term>
<term>Génome viral (génétique)</term>
<term>Humains</term>
<term>RNA replicase (génétique)</term>
<term>Séquence nucléotidique</term>
<term>Virus du SRAS (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term>
<term>Europe</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Viral</term>
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Génome viral</term>
<term>RNA replicase</term>
<term>Virus du SRAS</term>
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<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term>
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<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term>
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<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Base Sequence</term>
<term>Humans</term>
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<keywords scheme="Pascal" xml:lang="fr"><term>Animaux</term>
<term>Chine</term>
<term>Coronavirus</term>
<term>Europe</term>
<term>Génomique</term>
<term>Humains</term>
<term>Séquence nucléotide</term>
<term>Syndrome respiratoire aigu sévère</term>
<term>Séquence nucléotidique</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term>
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<front><div type="abstract" xml:lang="en">Bats may host emerging viruses, including coronaviruses (CoV). We conducted an evaluation of CoV in rhinolophid and vespertilionid bat species common in Europe. Rhinolophids carried severe acute respiratory syndrome (SARS)-related CoV at high frequencies and concentrations (26% of animals are positive; up to 2.4 x 10<sup>8</sup>
 copies per gram of feces), as well as two Alphacoronavirus clades, one novel and one related to the HKU2 clade. All three clades present in Miniopterus bats in China (HKU7, HKU8, and 1A related) were also present in European Miniopterus bats. An additional novel Alphacoronavirus clade (bat CoV [BtCoV]/BNM98-30) was detected in Nyctalus leisleri. A CoV grouping criterion was developed by comparing amino acid identities across an 816-bp fragment of the RNA-dependent RNA polymerases (RdRp) of all accepted mammalian CoV species (RdRp-based grouping units [RGU]). Criteria for defining separate RGU in mammalian CoV were a >4.8% amino acid distance for alphacoronaviruses and a >6.3% distance for betacoronaviruses. All the above-mentioned novel clades represented independent RGU. Strict associations between CoV RGU and host bat genera were confirmed for six independent RGU represented simultaneously in China and Europe. A SARS-related virus (BtCoV/BM48-31/Bulgaria/2008) from a Rhinolophus blasii (Rhi bla) bat was fully sequenced. It is predicted that proteins 3b and 6 were highly divergent from those proteins in all known SARS-related CoV. Open reading frame 8 (ORF8) was surprisingly absent. Surface expression of spike and staining with sera of SARS survivors suggested low antigenic overlap with SARS CoV. However, the receptor binding domain of SARS CoV showed higher similarity with that of BtCoV/BM48-31/Bulgaria/2008 than with that of any Chinese bat-borne CoV. Critical spike domains 472 and 487 were identical and similar, respectively. This study underlines the importance of assessments of the zoonotic potential of widely distributed bat-borne CoV.</div>
</front>
</TEI>
<affiliations><list><country><li>Allemagne</li>
<li>Bulgarie</li>
<li>Russie</li>
<li>République populaire de Chine</li>
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</country>
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<li>Berlin</li>
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<li>Schleswig-Holstein</li>
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<name sortKey="Glende, Jorg" sort="Glende, Jorg" uniqKey="Glende J" first="Jörg" last="Glende">Jörg Glende</name>
<name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name>
<name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name>
<name sortKey="Goettsche, Matthias" sort="Goettsche, Matthias" uniqKey="Goettsche M" first="Matthias" last="Goettsche">Matthias Goettsche</name>
<name sortKey="Hermanns, Uwe" sort="Hermanns, Uwe" uniqKey="Hermanns U" first="Uwe" last="Hermanns">Uwe Hermanns</name>
<name sortKey="Herrler, Georg" sort="Herrler, Georg" uniqKey="Herrler G" first="Georg" last="Herrler">Georg Herrler</name>
<name sortKey="Muller, Marcel Alexander" sort="Muller, Marcel Alexander" uniqKey="Muller M" first="Marcel Alexander" last="Müller">Marcel Alexander Müller</name>
<name sortKey="Muth, Doreen" sort="Muth, Doreen" uniqKey="Muth D" first="Doreen" last="Muth">Doreen Muth</name>
<name sortKey="Niedrig, Matthias" sort="Niedrig, Matthias" uniqKey="Niedrig M" first="Matthias" last="Niedrig">Matthias Niedrig</name>
<name sortKey="Pfefferle, Susanne" sort="Pfefferle, Susanne" uniqKey="Pfefferle S" first="Susanne" last="Pfefferle">Susanne Pfefferle</name>
<name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name>
<name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name>
</country>
<country name="Bulgarie"><noRegion><name sortKey="Yordanov, Stoian" sort="Yordanov, Stoian" uniqKey="Yordanov S" first="Stoian" last="Yordanov">Stoian Yordanov</name>
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<name sortKey="Zhelyazkov, Lyubomir" sort="Zhelyazkov, Lyubomir" uniqKey="Zhelyazkov L" first="Lyubomir" last="Zhelyazkov">Lyubomir Zhelyazkov</name>
</country>
<country name="République tchèque"><noRegion><name sortKey="Vallo, Peter" sort="Vallo, Peter" uniqKey="Vallo P" first="Peter" last="Vallo">Peter Vallo</name>
</noRegion>
</country>
<country name="Russie"><region name="District fédéral central"><name sortKey="Lukashev, Alexander" sort="Lukashev, Alexander" uniqKey="Lukashev A" first="Alexander" last="Lukashev">Alexander Lukashev</name>
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<country name="République populaire de Chine"><noRegion><name sortKey="Hongkui Deng" sort="Hongkui Deng" uniqKey="Hongkui Deng" last="Hongkui Deng">HONGKUI DENG</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences

Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences

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